Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcttaaagtagtgatttgttcttgaatcatatactaaagttgcttcaatcatactttgttatttaatgtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAATGCCCACCAGTTACAAGCATTT

Basic information

species Glycine max
transcript GLYMA04G30350.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G30350.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 3'ss of exon 4
--------------gtatggtcttaaagtagtgatttgttcttgaatcatatactaaagttgcttcaatcatactttgttatttaat-----gtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAATGCCCACCAGTTACAAGCATTT
               | |  | | | |    |  ||  ||         | |  |    ||  |   |  |||   |  || | |||     | |||||||||||| ||||  | |||  |||||||||||| ||||| ||||||||||| ||||||||||||  ||||||  || ||||||| || |||||||| 
gtgaggagttaggccttttctatgataaagatagttaatttcatgcatttctggtgggtttcttgataaaatatactaataatgaataccatgcagGGAAGTTGTGACTGAGTTAAAGAAAGCTGGTGCTACCTGGATACAGTTTGATGAGCCTACCCTTGTGTTGGATCTTGATTCCCACCACTTGCAAGCATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721376|gb|BW654572.1|BW654572
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtctt ... tttaatgtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
EST: gi|208126657|gb|GD923017.1|GD923017
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtctt ... tttaatgtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttgaatcatatactaaagttgcttcaatcatactttgttatttaatgtagGGAAGTTGTGGCTGAACTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAATGCCCACCAGTTACAAGCATTT
                              aatcatactttgttat  TA-rich tract