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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caactctttgggttcgtttgtgttaattgtaatatttgttagagatggatgatattgtttgttgattctcattctttcaatccttttggctttgttgcagTTCTTATGGGCAGAATCTAGAAACTAGCACGTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCCCATTTAATT

Basic information

species Glycine max
transcript GLYMA04G24950.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193448459|gb|FK412414.1|FK412414
EST:     TTTATCCCAAAGTACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAG                         TTCTTATGGGCAGAATCTAGAAACTAGCACGTTTATTGGAGAAACATCAT
genomic: TTTATCCCAAAGTACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAGgtattacttg ... tttgttgcagTTCTTATGGGCAGAATCTAGAAACTAGCACGTTTATTGGAGAAACATCAT
EST: gi|208118381|gb|GD918274.1|GD918274
EST:     TTTATCCCAAAGTACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAG                         TTCTTATGGGCAGAATCTAGAAACT
genomic: TTTATCCCAAAGTACCTTTATTGTTTATGGTGGGGATTGCAACAATTAAGgtattacttg ... tttgttgcagTTCTTATGGGCAGAATCTAGAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatgatattgtttgttgattctcattctttcaatccttttggctttgttgcagTTCTTATGGGCAGAATCTAGAAACTAGCACGTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCCCATTTAATT
              tgttgat  putative branch site (score: 4)
                                            ctttgtt  putative PPT
      atattgttt  TA-rich tract