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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagttacatcacttttaagtaaatcctacatcttaggcctcactctctccttgcattttcataacatgccttacttaaaatgattctaagtttttgtgggcattaattttagGGGAAAGATGAGAGGGGAACCTCGCTTCAACAGCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG

Basic information

species Glycine max
transcript GLYMA04G10200.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10200.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtagttacatcacttttaag-taaatcctaca-tcttaggcctcactc--tctccttgcattttcataacatgccttacttaaaatgattctaagtttttgtgggcattaatt--ttagGGGAAAGATGAGAGGGGAACCTCGCTTCAACAGCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG
||| || |||   |     || |  ||||   |  | |   ||    || ||  ||| ||| | ||||  |   |||  ||| || |  |  ||  ||  | |||  |   ||  ||  ||    |  | | |||||||   ||| ||||||||| ||||||||||| |||||||| ||||||||| | ||||| ||||| ||||| |||
gttagttgttctgttgtagttgatctaaactgtgaagtgacagtgagcaatcgttcttctttctttttatttttatgttttatttta--ttttttaaatctgttgatgagtttggttctttttcagGGAAAAGAGAGGGAGGCCTGGCTTCAACAACTCACATATGGTGTTTTTGGTCTGGGTAACCGCCAATATGAACATTTTAACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcataacatgccttacttaaaatgattctaagtttttgtgggcattaattttagGGGAAAGATGAGAGGGGAACCTCGCTTCAACAGCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAG
                 ttaaaatgattctaag  TA-rich tract