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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctcctattgtctctctttaatctgtccctacctattaatatgttcagatgtcctattgtccttactatttcatatttttagccatttaatatcatctgcaattgttataatcaataaactgatatgacttttggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGGCTG

Basic information

species Glycine max
transcript GLYMA04G09470.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G09470.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g08150.t01 (Vitis vinifera), 3'ss of exon 2
gtatgcctcctattgtctctctttaatctgtccctacctattaatatgttcagatgtcctattgtccttactatttcatatttttagccatttaatatcatctgcaattgttataatcaa---taaactgatatgacttttggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGGCTG
                                                                          |  | ||  ||        ||| |    |    ||     |||| |   || | ||| ||    |||    | |||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||  ||||| ||||||||||||  ||| |||| |||||||| |||||||  |
-------------------------------------------------------------------------gtatacatcatttcgtcgcaaattttggttatgcttacataaatccagggtacattgacattgtcttt----tcacagGAAACCACATTTATAGAGCAACTGGTGGAAGATGAAAGTCAAATGGAAGGGACACCTGCTGGTTGTTCAAGGATAATGAACTGGCATCTTCATTTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20813076|gb|BQ297554.1|BQ297554
EST:     CTTCTTCAAATCCCGTACGACAGTTAGACACAGTGAAGGAGGGTTTTCAA                         GAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
genomic: CTTCTTCAAATCCCGTACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcc ... ggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
EST: gi|17153212|gb|BM143145.1|BM143145
EST:     TCTTCAAATCCCGTACGACCAAG--GGACACAGTGAAGGAGGGTTTTCAA                         GAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT
genomic: TCTTCAAATCCCGTACGA-C-AGTTAGACACAGTGAAGGAGGGTTTTCAAgtatgcctcc ... ggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatcatctgcaattgttataatcaataaactgatatgacttttggtttgacagGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGGCTG
                             aactgat  putative branch site (score: 3)
            aattgttataatcaat  TA-rich tract