1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctatcatacgcttacaaacttgatttgacatatccgatcttgatatgtaataatatgcttacaaatctcatgtataataaatatacctaatgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGAAAAA
species | Glycine max |
transcript | GLYMA04G08530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|192327626|gb|FK020659.1|FK020659
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|298170636|gb|HO019260.1|HO019260
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGEST: gi|151394888|gb|EV264759.1|EV264759
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAG
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|192331951|gb|FK026735.1|FK026735
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|192327625|gb|FK020658.1|FK020658
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|17518633|gb|BM187675.1|BM187675
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|192299133|gb|FG992879.1|FG992879
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|192303639|gb|FG994533.1|FG994533
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|151412807|gb|EV282619.1|EV282619
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACEST: gi|208048593|gb|GD847524.1|GD847524
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGEST: gi|192299132|gb|FG992878.1|FG992878
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAG
EST: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAG CTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
genomic: TGTTAACAGGCTAAACAAGACAAAAGTGGAAAGGAAACCTGATTTGAAAGgtacttaata ... tgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAAC
tgtaataatatgcttacaaatctcatgtataataaatatacctaatgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGAAAAA
ttacaaatctcatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcatacgcttacaaacttgatttgacatatccgatcttgatatgtaataatatgcttacaaatctcatgtataataaatatacctaatgtgctgcagCTGAGCGAGAAGCAGTTAATGCAGCTGAGAGAGCTGAGAGAAAACAACAACTGAGAGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - catacgc
- - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat