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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctttttctcacgtccaatgtgcttatcatttcgagtcaatagaatctttttcaacatatttgctattttatgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGAGGACCTCATAGTCTGGCGTTTTCCATATTTCCGTT

Basic information

species Glycine max
transcript GLYMA04G08510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08510.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtatgttctttttctca-cgtccaatgtgcttatc--------atttcgagtcaatagaatctttttca-acatatttgctattttatgt-ctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGAGGACCTCATAGTCTGGCGTTTTCCATATTTCCGTT
                      ||| |  | | || |   |   || |  ||||          ||||  ||   | |  || || ||  ||||  |   | || ||| | ||  |||||||||||  ||||    |||| ||||| | ||||||||||||||||||| ||||  ||  |||||| |||||||||||| || |
gtatgttctttccgtatggatcatgctactatgcttaatatttgatataattatttagaaatagtttcatgtggtttggttcattatctcacattatctttcttctattttctgtagGGCAACATTGCTACCTGCAATTAGACGTTATTTGCCAAAGCATTGGAATGATGACCCTATCATCTGGCATTTTCCATATTTTCGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26267892|gb|CA818955.1|CA818955
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
EST: gi|120494247|gb|EH222414.1|EH222414
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
EST: gi|6481874|gb|AW201145.1|AW201145
EST:     AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTC                         GGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA
genomic: AACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCgtatgttctt ... atgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatttcgagtcaatagaatctttttcaacatatttgctattttatgtctacagGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGAGGACCTCATAGTCTGGCGTTTTCCATATTTCCGTT
                               atatttgctattttat  TA-rich tract