1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtatactttataaagtgcattactgaaagagctgctcttgatggcatctgtttgtgactggtttaatatcattgtgtgtttcgcttgtgatctactcagAGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCATCTAAGTTGGGTGCAGATTCTGGTTTGAAAGTGTATCTGGGAGATGAAT
species | Glycine max |
transcript | GLYMA04G07860.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACAGCTCATTCAG AGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCA
genomic: ATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACAGCTCATTCAGgtgattgttt ... atctactcagAGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCA
catctgtttgtgactggtttaatatcattgtgtgtttcgcttgtgatctactcagAGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCATCTAAGTTGGGTGCAGATTCTGGTTTGAAAGTGTATCTGGGAGATGAAT
gtttaat putative branch site (score: 4)
tctactc putative PPT
tttaatatcattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatactttataaagtgcattactgaaagagctgctcttgatggcatctgtttgtgactggtttaatatcattgtgtgtttcgcttgtgatctactcagAGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCATCTAAGTTGGGTGCAGATTCTGGTTTGAAAGTGTATCTGGGAGATGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - -gcattac
- - - - - - - - - - - - - - - - ctgctct
- - - - - - - - - - - - - - - - - - - -tgatggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgtg