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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttggatttgtccactatccatattgcatgcattcaaatgttctgttgttgtgacatgtaatatttctatttcatggttttctataatgacaattattacaaatgctcatgatgtttttaaaatttcagACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCTATTGATCTATGAATTCAATCTTCCTG

Basic information

species Glycine max
transcript GLYMA04G07760.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07760.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g04520.t01 (Vitis vinifera), 3'ss of exon 34
gttatttggatttgtccactatccatattgcatgcattcaaatgtt--ctgttgttgtgacatgtaatatttctatttcatggttttctataatgacaattattacaaatgctcatgatgtttttaaaatttcagACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCTATTGATCTATGAATTCAATCTTCCTG
                        || |||||||| || || | ||   |||  || |  |||| ||     ||  |      | || ||||||    ||| ||||     ||  |  |||| ||    || |||  |||| ||| | |||||||||  ||| || |||||||||||||||||||| |||| | |||| |||||||||||||||||||
------------------------atgttgcatgctttaaagtattatttgtccttctatcatgcaa-----cttctgagaaatattttataatattgatt-ttaccttcact-gtattgttgtt----ttgcagGAGAAGATGTGAGATTGCAGAGACTCTAGTGGAGAAGAATTTTGATTTGGCTTTCCGACTGATATATGAATTCAATCTTCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttctataatgacaattattacaaatgctcatgatgtttttaaaatttcagACGAAGGTGTAAAATTGCAGAGGTTCTTGTTGAGAAGAATTTTGATTTGGCATTCCTATTGATCTATGAATTCAATCTTCCTG
        tataatgacaattatt  TA-rich tract