1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ccgcttaattctaataagcttcatgaaacccaagcccattttctatgccttgttattgtagtgtgattatgcgtattaatggctggttttgcttttacagGGTGGAGATTTTGTCAATCGAAATG
species | Glycine max |
transcript | GLYMA04G07300.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAG GGTGGAGATTTTGTCAATCGAAATGEST: gi|298174857|gb|HO014774.1|HO014774
genomic: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAGgtatgttgtt ... gcttttacagGGTGGAGATTTTGTCAATCGAAATG
EST: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAG GGTGGAGATTTTGTCAATCGAAATGEST: gi|208306168|gb|GE105829.1|GE105829
genomic: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAGgtatgttgtt ... gcttttacagGGTGGAGATTTTGTCAATCGAAATG
EST: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAG GGTGGAGATTTTGTCAATCGAEST: gi|192310933|gb|FG998909.1|FG998909
genomic: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAGgtatgttgtt ... gcttttacagGGTGGAGATTTTGTCAATCGA
EST: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAG GGTGGAGATTTTGTCAATCGAAATG
genomic: ACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAGgtatgttgtt ... gcttttacagGGTGGAGATTTTGTCAATCGAAATG
tgccttgttattgtagtgtgattatgcgtattaatggctggttttgcttttacagGGTGGAGATTTTGTCAATCGAAATG
tattaat putative branch site (score: 2)
ttttgctttt putative PPT
tattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgcttaattctaataagcttcatgaaacccaagcccattttctatgccttgttattgtagtgtgattatgcgtattaatggctggttttgcttttacagGGTGGAGATTTTGTCAATCGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT