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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatagggaattggtctatagctatagcattcaatccagggatcaaagtcacttttcaaaatgtttgtcaagttctaattctatagtttttgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA

Basic information

species Glycine max
transcript GLYMA04G07120.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07120.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g05460.t01 (Vitis vinifera), 3'ss of exon 4
--aaatagggaattggtctatagctatagcattcaatccagggatcaaagtcacttttcaaaatgtttgtcaagttctaattctatagtttttgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA
     |    ||   | |  ||  | ||  | |   |      ||     || ||||   |  |   | |  |    | ||||||| |   | |  || |||||||||||| || ||||||||| || ||||||||||||||||| | |||| ||| || |||||    
agggttgcttaagcaggccttatttgtaataatttttgttaccatttttttc-ctttctgatcttactatttatagttgattctattgcaat-gtattgcagTTGGAATGCAACATATGAGAGTTTACTGGGGACCAACAAGCCTCTCCCCCAGCCTATCCCTCTCCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298186285|gb|HO036918.1|HO036918
EST:     GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAG                         TTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
genomic: GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAGgtaaataaat ... tgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
EST: gi|151409723|gb|EV279531.1|EV279531
EST:     GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAG                         TTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
genomic: GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAGgtaaataaat ... tgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
EST: gi|58020771|gb|CX707513.1|CX707513
EST:     GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAG                         TTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
genomic: GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAGgtaaataaat ... tgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
EST: gi|192332868|gb|FK024965.1|FK024965
EST:     GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAG                         TTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG
genomic: GGAAACAGAAGGCATGAGAATAAGAAACAAGTTGGAGAACCTATAATAAGgtaaataaat ... tgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtcacttttcaaaatgtttgtcaagttctaattctatagtttttgctttacagTTGGAATGCCACCTATGAGAGTCTAATGGGGACCAACAAGCCTTTTCCCCGGCCAATTCCTCTTGGA
                           ttctaat  putative branch site (score: 2)
                                         tttttgcttt  putative PPT
                              taattctatagttttt  TA-rich tract