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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggattaaatgttaatagcttttaaaagtctgcgttcgagtcccatcattttgaatctcttcccacgtgattgacctcaatgtctttttttaattttttttttttatgtagGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGT

Basic information

species Glycine max
transcript GLYMA04G06810.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208118484|gb|GD918293.1|GD918293
EST:     GGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAG                         GGTTATAAAGAGAAAGTTGTGGACATAAGAGAGG
genomic: GGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGgtaagggatt ... ttttatgtagGGTTATAAAGAGAAAATTGTGGACATAAGAGAGG
EST: gi|120494985|gb|EH223152.1|EH223152
EST:     GGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAG                         GGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGA
genomic: GGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGgtaagggatt ... ttttatgtagGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGA
EST: gi|208050779|gb|GD848928.1|GD848928
EST:     GGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAG                         GGTTATAAAAGAGAAAGTTGTGGACATAAGAGAGG
genomic: GGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGgtaagggatt ... ttttatgtagGGTTATAAA-GAGAAAATTGTGGACATAAGAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttcccacgtgattgacctcaatgtctttttttaattttttttttttatgtagGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGT
                               ttttaat  putative branch site (score: 3)
                        tgtctttttttaattt  CT-rich tract
                    tcaatgtcttttttta  TA-rich tract