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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtctttattttatagcactatggccattgttatgaatgccggttagtatttttacttattttgtctgaattcgcagAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGG

Basic information

species Glycine max
transcript GLYMA04G06420.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06420.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os09g38530.1 (Oryza sativa), 3'ss of exon 4
-----------gtatggtctttattt-tatagcactatggccattgttatgaatgccgg-ttagtatttttacttattttgtctgaattcgcagAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGG
                 |   |  ||   |  |  | |    |||  |||     | || |||  |   |    ||| |    || |||| ||||||||||| ||||| ||||| ||||||||||||||| |||||   || |||||||| || |||       | |||  | ||||||| ||||| |||||||
gtaagttgtgcactcaattgatgcttgcttgaccttctatttattcatatatgctctggattaacaaactgtgatatataaa-tgtattcacagAGCAAGGAAGAGAAGTACTTCATTCACAACCATTTGTCATTTTTAGTGAAGTACCACAAGGACGATGATTCAGAACTTTCTAGAATAGTGGGATTTGAGG

upper sequence: GLYMA04G06420.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G006117_T01 (Zea mays), 3'ss of exon 4
------------------------------------------gtatggtcttta----ttttatagcactatggccattgttatgaatgccggttagtatttttacttattttgtctgaattcgcagAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGG
                                           |    ||||||    |||  | | ||  |    ||  ||||   | |   | | |  |  |||  ||||| |         ||||  ||||| ||||||||||| || |||||||||||| ||||||| || ||||| || || |||         |||  | ||||||| ||||| |||||||
gtaagtccttttgttcacttaatgtttactttttctttatgcatgcaatctttaattctttgttggaaccctttatatatttatctgtacaaataaattctcgtacacattttttt--------cagACAAAGGATGAGAAATACTTCATACACAACCATTTGTCATTTACGGTGAAGTATCACAAGGACGATAATTTGGAACATTCTAGAATAGTGGGATTTGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712505|gb|BW653688.1|BW653688
EST:     CTGCCTATCAGCTTGGTTTTCTTGTTGGACTCAAAGGGCAGTATAGTGGG                         AGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGT
genomic: CTGCCTATCAGCTTGGTTTTCTTGTTGGACTCAAAGGGCAGTATAGTGGGgtatggtctt ... gaattcgcagAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGT
EST: gi|209727150|gb|BW655215.1|BW655215
EST:     CTGCCTATCAGCTTGGTTTTCTTGTTGGACTCAAAGGGCAGTATAGTGGG                         AGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTAC
genomic: CTGCCTATCAGCTTGGTTTTCTTGTTGGACTCAAAGGGCAGTATAGTGGGgtatggtctt ... gaattcgcagAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggccattgttatgaatgccggttagtatttttacttattttgtctgaattcgcagAGCAAGGAGGAGAAATACTTTATTCACAACCATTTGGCATTTACTGTTAAGTACCATAAAGACATGCTAACTGAATCTGCTAGAATTGTGGGCTTTGAGG
                     ttagtatttttactta  TA-rich tract