1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agttcaagaataaacaacaaagtctcttattgagtcatttgtttttgaatctatttgacttttttttttaaagtttaattggattttaatttgaaaacagGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGCTGCTCATGGAAAAG
species | Glycine max |
transcript | GLYMA04G06010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGATCATTCTTGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|21600867|gb|BQ611198.1|BQ611198
genomic: CGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgtgtcttc ... ttgaaaacagGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGCGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTEST: gi|21600505|gb|BQ610836.1|BQ610836
genomic: GGGAAGAGGCTCGCGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgtgtcttc ... ttgaaaacagGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGT
EST: GGGAAGAGGCTCGCGATCATGCATGCTTACGTAATGCATATTTTGAGCAG GCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGT
genomic: GGGAAGAGGCTCGCGATCATGCATGCTTACGTAATGCATATTTTGAGCAGgtgtgtcttc ... ttgaaaacagGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGT
tgaatctatttgacttttttttttaaagtttaattggattttaatttgaaaacagGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGCTGCTCATGGAAAAG
ttttaat putative branch site (score: 3)
ttttttttttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttcaagaataaacaacaaagtctcttattgagtcatttgtttttgaatctatttgacttttttttttaaagtttaattggattttaatttgaaaacagGCACAGCAAGCCTATCTAATTGGTGATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGCTGCTCATGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - aacaaca