1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catgtttaatatgaaatacaaataccttcaactttatctgccttttggttcataaagtgtatccttctgaattttgactttgttttttaccaccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCTCTGCCACAATGCCTCCTGAAGCCCTGGAAATCACAAGGAAGTTTATGA
species | Glycine max |
transcript | GLYMA04G05580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTEST: gi|192332026|gb|FK026320.1|FK026320
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGT
EST: TTGTATTGGATGAGG-AGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTEST: gi|14125422|gb|BG789860.1|BG789860
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTT
EST: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGTTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCEST: gi|254316889|gb|GR828426.1|GR828426
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
EST: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCEST: gi|163923524|gb|EH038377.1|EH038377
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
EST: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCEST: gi|192309979|gb|FK001845.1|FK001845
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
EST: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCEST: gi|9566049|gb|BE475620.1|BE475620
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
EST: ATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCEST: gi|254329500|gb|GR839053.1|GR839053
genomic: ATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
EST: GTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAG ATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
genomic: TTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGgtcctctcat ... caccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTC
tggttcataaagtgtatccttctgaattttgactttgttttttaccaccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCTCTGCCACAATGCCTCCTGAAGCCCTGGAAATCACAAGGAAGTTTATGA
ttttgac putative branch site (score: 3)
ctttgttttttaccac CT-rich tract
tttgtttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtttaatatgaaatacaaataccttcaactttatctgccttttggttcataaagtgtatccttctgaattttgactttgttttttaccaccttccagATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCTCTGCCACAATGCCTCCTGAAGCCCTGGAAATCACAAGGAAGTTTATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
catgttt
- - - - - - gaaatac
- - - - - - - - - - - -accttca
- - - - - - - - - - - - - - - - - - -ctgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctg