1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagtaacctcaacatctctcaaataattttaaaaaataattgttgattacatgtcttatacatgtgaatgccactaaaattgttcttaattgtacggaaatttgtttgtattcttggtgttttggattgttgttgtattgattatgtactatatggactctcactgtccttattatgcccccccttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG
species | Glycine max |
transcript | GLYMA04G05550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|308098158|gb|HO761329.1|HO761329
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|151400828|gb|EV270642.1|EV270642
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|151403620|gb|EV273430.1|EV273430
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|254318543|gb|GR832711.1|GR832711
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|209721045|gb|BW666302.1|BW666302
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|192296477|gb|FG991627.1|FG991627
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|120494056|gb|EH222223.1|EH222223
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGAEST: gi|209721044|gb|BW666301.1|BW666301
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGA
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|120494245|gb|EH222412.1|EH222412
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACEST: gi|151394491|gb|EV264362.1|EV264362
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
EST: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTG GAGGATATGGAACCATGGAAGAGCTGTTGGAGATAATAACTTGGGCCCAAC
genomic: GCGTAAGGCTGCAATGGCACAAGAAGCTGATGCATTTGTTGCTCTCCCTGgtagtaacct ... ttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAAC
gattatgtactatatggactctcactgtccttattatgcccccccttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG
ctctcac putative branch site (score: 3)
ttatgccccccctt putative PPT
ttataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaacctcaacatctctcaaataattttaaaaaataattgttgattacatgtcttatacatgtgaatgccactaaaattgttcttaattgtacggaaatttgtttgtattcttggtgttttggattgttgttgtattgattatgtactatatggactctcactgtccttattatgcccccccttataattagGAGGATATGGAACCATGGAAGAGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG