1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtcacatgtcaccctcaccttgtacttgtttttttgcaataaataacattaaaatacttcaacttacatttgataattgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAG
species | Glycine max |
transcript | GLYMA04G03150.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCC TTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACEST: gi|193454971|gb|FK416918.1|FK416918
genomic: AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCgtatgtcaca ... ttgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC
EST: AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCC TTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC
genomic: AGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCgtatgtcaca ... ttgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGAC
ttttgcaataaataacattaaaatacttcaacttacatttgataattgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAG
aataaataacattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcacatgtcaccctcaccttgtacttgtttttttgcaataaataacattaaaatacttcaacttacatttgataattgacaccagTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG