1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cccaggtctccctatgtgggagaacaattaaaatgagggagattacatgtggaaaaagtgggacaacaatgattcaaatattttatattgtcattttcagAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGT
species | Glycine max |
transcript | GLYMA04G01970.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACCGACCTTGCTACCTACAAT AGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGEST: gi|209714282|gb|BW677022.1|BW677022
genomic: CACCGACCTTGCTACCTACAATgtatgttgct ... tcattttcagAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTG
EST: CGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAAT AGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGEST: gi|192327836|gb|FK022423.1|FK022423
genomic: CGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATgtatgttgct ... tcattttcagAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTG
EST: CGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAAT AGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTG
genomic: CGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATgtatgttgct ... tcattttcagAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTG
catgtggaaaaagtgggacaacaatgattcaaatattttatattgtcattttcagAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGT
tcattttc CT-rich tract
aatgattcaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaggtctccctatgtgggagaacaattaaaatgagggagattacatgtggaaaaagtgggacaacaatgattcaaatattttatattgtcattttcagAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - tctccct
- - - - - - - -gtgggag
- - - - - - - - - - - - - - - - - gagggag
- - - - - - - - - - - - - - - - - - - - - - acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaag