Sequence
atgc intronic sequence ATGC exonic sequencegtttgttctttctcaagtcttggagttattttttcatttctcttagtggaagtgaataatactatttacctatatgatttcatcgttcataccacaaatttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGTTAATTACAGGAAGGAGT
Basic information
species | Glycine max |
transcript | GLYMA04G01440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttgttctttctcaagtcttggagttattttttcatttctcttagtggaagtgaataatactatttacctatatgatttcatcgttcataccacaaa-tttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGTTAATTACAGGAAGGAGT
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-------------gtatatatatagataccctctc--ttctttcagtt-atcaggctcatattgtttctttacattttatcttcttacacctttttaactttctgcagATATGTTTCACCGGAATATGCAAGTACTGGTATGCTCAATGAGTGTAGTGATGTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGC
upper sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 4
gtttgttctttctcaagtcttggagttattttttcatt-tctcttagtggaagtgaa---taa---tactatttacctatatgatttcatcgttca------tacca-caaatttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGTTAATTACAGGAAGGAGT
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gtatgttcttcctcggtttcctataatatttttcaataatttgttagttagatttaaacttgaatgtattatttctctgtacacatgtattattaagttatttatcatcatttttctgtagATATGTCTCTCCCGAGTATGCAAGCACGGGTATGCTTAGTGAAGGGAGTGATGTCTATAGTTTTGGAGTTCTACTTATGGAGATAATTACTGGAAGGAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51344256|gb|CO984989.1|CO984989EST: TTAGGGTCTGAGAAAAGCTATGTGACAACGCGCGTAATGGGGACATTCGG ATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGA
genomic: TTAGGGTCTGAGAAAAGCTATGTGACAACGCGCGTAATGGGGACATTCGGgtttgttctt ... atttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaataatactatttacctatatgatttcatcgttcataccacaaatttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGTTAATTACAGGAAGGAGT
tttctgc CT-rich tract
aatactattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttctttctcaagtcttggagttattttttcatttctcttagtggaagtgaataatactatttacctatatgatttcatcgttcataccacaaatttctgcagATATGTTTCACCTGAGTATGCAAGCACTGGTATGCTTAATGAGGGAAGCGATGTGTATAGTTTTGGGATTCTACTGATGGAGTTAATTACAGGAAGGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG