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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgccttattttatctactaggcatggaaacagtttgaatggcctcctaaatttaccctaattgaacttttctttctacagTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCC

Basic information

species Glycine max
transcript GLYMA04G01230.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01230.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 3'ss of exon 5
-------------------------------------gtactgccttattttatctactaggcatggaaacagtttgaatggcctcctaaatttaccctaattgaacttttctttcta---cagTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCC
                                     | ||| | | |||   | |  | |  |     |   || || |     ||| |    |     ||     | |||| ||||   ||| ||||   ||||||||||||||| ||||||||||||||||| ||||| || |||||  |  | || || ||||| || ||||||||||| ||||| || |
gtactcattttatctgttagcctaagttgatgtgccagaacttcttgattcctttt--tggaaaaaaggatgcttcgact--ttgcctgatccaatgtggatgtggatgttctatctattgcagACACTTTGCCGTATGTTCATCATTAATGCTGGTTCTGGATTCAGGCTGTTATGGAATACTGTCAAATCTTTCCTTGACCCCAAGACCACTTCAAAGATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaacagtttgaatggcctcctaaatttaccctaattgaacttttctttctacagTCACTGAACCGTATGTTCATCATCAATGCTGGTTCTGGATTTAGGCTCTTGTGGAACTCCATTAAGTCATTCCTAGATCCCAAGACCACCTCAAAAATCC
                                        cttttctttctac  CT-rich tract
                     taaattta  TA-rich tract