Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgttacctctaatttttcatctttgcgttgactactgtaaactaaagttatataacatacaagtaacatttttgttgtataattgacatcatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAG

Basic information

species Glycine max
transcript GLYMA04G01220.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01220.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 5
----gtattatgttacctctaatttttcatctttgcgttgactactgtaaactaaagttatataacatacaagtaacatttttgttgtataattgaca--tcatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAG
    |  || ||| |  | |  ||  ||| | ||||      || | |   | ||  | | |     || |  || | ||| | || | | ||   ||  |   |||||  |||||||| | |||||| |||| ||||| || ||||  ||  |||||||||||||||| |||||||||||||||
gtatgctttctgtaattttttcttggtcaccattgcaaaatatattttggcccaa--tcaaaatgtttaaacttatcttttctatt-tctgatcatcaattttccagGGTTTTAAGAACCTAACAAAGGCTGCACGGGATCTCATTATGCGGCTGCAGAAGATTGATGGGGATAATTACCCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306575|gb|FG996237.1|FG996237
EST:     CCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAG
genomic: CCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTGgtattatgtt ... acatcatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAG
EST: gi|11274643|gb|BF324980.1|BF324980
EST:     CCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTCATTACCCGATTGCAG
genomic: CCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTGgtattatgtt ... acatcatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAG
EST: gi|151395356|gb|EV265227.1|EV265227
EST:     CCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTG                         GGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAG
genomic: CCAAGAGGCACATTGATTCCAGCACCACAATCTTAGATGTTCACGGAGTGgtattatgtt ... acatcatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaagttatataacatacaagtaacatttttgttgtataattgacatcatcagGGCCTTAAGAACTTTACAAAGTCTGCCCGGGAACTTATTACCCGATTGCAGAAGATTGATGGTGATAATTACCCTGAG
                       taacatttttgttgta  TA-rich tract