1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagttttttaatgcatattctttaatctttccactgatgttgatgtccaactgacaaaagtaacaagagtaatgtcgagtgtaatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTTCTGAGAGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCAGATGAAGG
species | Glycine max |
transcript | GLYMA04G00980.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCATTTATGGTGCTTEST: gi|151397776|gb|EV267649.1|EV267649
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
EST: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTTEST: gi|192302630|gb|FG994882.1|FG994882
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
EST: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTTEST: gi|213620291|gb|DB961436.1|DB961436
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
EST: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAG CATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
genomic: TTATAATGCCTCCTTCAGTCCTTGACCGTCTAGgttagttttt ... aatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTT
tgttgatgtccaactgacaaaagtaacaagagtaatgtcgagtgtaatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTTCTGAGAGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCAGATGAAGG
aagtaac putative branch site (score: 2)
aaaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttttttaatgcatattctttaatctttccactgatgttgatgtccaactgacaaaagtaacaagagtaatgtcgagtgtaatcttgcagCATTTCTACGTATGGATTATCCAATGATGTTTGAACTCAGAAATGGTGCTTCTGAGAGGGTTTCTCATTGTGGGGTTCTGGAGTTCATTGCAGATGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG