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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtagGTGGAAGGAGTTAAGCATTCGGGCCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT

Basic information

species Glycine max
transcript GLYMA04G00640.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00640.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtagGTGGAAGGAGTTAAGCATTCGGGCCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT
                        | |||   |||| || ||||         ||  | |  || |||   |||  |  | |  |  | |||||| |    |    |||||   ||| || |     ||||| |||||||| |||||||| || || | |||  ||||| |||| || || ||||||||||||||||| |||||||| || |||||||| ||||||||
------------------------ttaatg--cataaatgttatatacttgtagagttgtagataattgaattttcttataga-aggagaataatgtaatgtaccaatgttggaata-ataa--aaatagGTAGAAGGAGTGAAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTACACATTCGGTGGACATGCTGTTACTGT

upper sequence: GLYMA04G00640.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 4
gtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatc-ttgatgttactatatatgattgtgtagGTGGAAGGAGTTAAGCATTCGGGCCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT
                          | ||  ||||||| | ||||   |    ||| |  |   || || ||    | | |  |  || ||  |||    |  || || |   ||| | | | || | || |||||||||| || || || || ||  ||||  |||| ||||| || || ||||| |||||||||||||||||||| ||||||||||| || |||||
------------------------gtactatacatatatctcattcaaccaaatatccaaaacatatgatattaaa-attagtaa--atgattttatttatttatttatttatttatttgttaatgggcagATGGAAGGAGTGAAACACTCAGGTCCATCCAAGCTGGTGCTATACTTCACAGGGGCTACAAACATTCTCTACACATTCGGGGGACATGCTGTGACTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtagGTGGAAGGAGTTAAGCATTCGGGCCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGT
                          tcttgat  putative branch site (score: 4)
        tactataataatat  TA-rich tract