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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcaatctttgccactaaatctgatacttttatcctttggtgggttgttcctttgacttcattggtgcatgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTAT

Basic information

species Glycine max
transcript GLYMA04G00530.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G049141_T02 (Zea mays), 3'ss of exon 4
gtaagtgcaatctttgccactaaatctgatacttttatcctttggtgggttgttcctttgacttcattggtgcatgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTAT
||| |  | || || ||   |      | |||  ||||   ||    | ||||    || |   |||  ||   |  ||||| |||| || ||||| || | ||| |||||||| || ||||| | |||||||||  | || || ||||||| ||||||||| ||||||||||| || |
gtacgctccattttggctttttg----ggtacaattatttgttttacgtttgtgaagtttatgccat--gtttttatagGGTGTGATTCGTCTTCTCTCAATATGCGCAAGTGGATCACCTCTGGCAGCTAAAACACTTCTCCTTCTTGGAATTAGTGGCATACTTAAAGATATCCTTT

upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtgcaatctttgccactaaa-tctgatacttttatcctttggtgggttgttcctttgacttcattggtgcatgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTAT
|||  | |||  |||      ||| |   | |         ||    ||| |     | ||||||   |   |||||||||| || ||||| |||||||| ||||||||||||||||||||| | ||||| |||||  |||||||||| || |  ||||||||||||||||||||| |||
gtagatacaacttttattttcaaaattccacatcaaaggttttcttcgggctccaaatgtgactt--gtaaggcatgcagGGGTTAATCCGACTTCTTTCTACATGTGCAAGTGGGTCTCCTTTGGGAGCCAAAACTCTGCTTCTCCTAGGTATCAGTGGCATTCTTAAAGATATATTAT

upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtgcaatctttgccactaaatctgatacttttatcctttggtgggttgttcctttgacttcattggtgcatgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTAT
|||  || |    |   |  | |   ||||    ||||| ||   |||||      | |||||| || ||| ||||||||| || ||||| |||||||| | ||||||||  ||||||||  | ||||| ||||| ||||||| ||||| ||  |||||||||||||||||||||||  
gtagttgaagatgtacactttcagattgat-tgcttatctttgtttgggtcaaat-tctgactt-atcggt-catgcagGGCTTAATCCGGCTTCTTTCAATATGTGCAAAGGGGTCTCCCTTAGGAGCCAAAACTTTGCTTCACCTTGAAATCAGTGGCATTCTTAAAGATATACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgatacttttatcctttggtgggttgttcctttgacttcattggtgcatgcagGGTTTGATCCGCCTTCTTTCCACATGTGCAAGTGGGTCTCCTCTTGGAGCTAAAACGTTGCTTCTCCTTGGAACTAGTGGCATTCTTAAAGATATACTAT
                               ctttgac  putative branch site (score: 4)
     tacttttat  TA-rich tract