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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactaatgctttccctttacctcacctggctatgatggactcattagtatgatttagctacactaatatctgtattatcacagTGAGTAAGACTGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTTCAG

Basic information

species Glycine max
transcript GLYMA0428S00200.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0428S00200.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g03170.t01 (Vitis vinifera), 3'ss of exon 4
gtatactaatgctttccctttacctcacctggctatga------tgga----------ctcattagtatgatttagc------tacactaat-atctg--tattatca--------cagTGAGTAAGACTGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTTCAG
||| |   ||  | |     || ||||  ||||| | |      ||||           | | || |||  || | |       | | |||| ||  |  || | |||        |||  | ||  ||||| |||||||||||||| || |||| | | |||||||| ||||| || ||||||||||| ||||| || ||  | 
gtaaatagattttgtttaggtatctcatttggctttcaataggttggagacttcaatatttactaatattcttaatcatcttgcatattaattatgaggctactgtcaaatacttgcagAAAATACTACTGCTTGGAGGACAGATGAAGAGTTTGGACGAGAAATGCTGGCAGGAGTAAACCCTGTTATAATCCGTCGCCTAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctatgatggactcattagtatgatttagctacactaatatctgtattatcacagTGAGTAAGACTGCATGGAGGACAGATGAGGAATTTGCAAGGGAAATGCTTGCAGGGGTTAACCCTGTTATTATCCGCCGTCTTCAG
                                cactaat  putative branch site (score: 2)
                                   taatatctgtattat  TA-rich tract