1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgctctctctattggattaaatctgtatataggaataggactactgttttttctcacgccccctgaccctttttggggggttttacttttgttgtgcagAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG
species | Glycine max |
transcript | GLYMA03G42260.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAG AGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATEST: gi|208144335|gb|GD941190.1|GD941190
genomic: ATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGgcaatatttt ... tgttgtgcagAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAAT
EST: ATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCGTAGAAG AGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATEST: gi|120496677|gb|EH224844.1|EH224844
genomic: ATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGgcaatatttt ... tgttgtgcagAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAAT
EST: ATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAG AGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAAT
genomic: ATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGgcaatatttt ... tgttgtgcagAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAAT
tgttttttctcacgccccctgaccctttttggggggttttacttttgttgtgcagAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG
ttttactttt CT-rich tract
ttttactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctctctctattggattaaatctgtatataggaataggactactgttttttctcacgccccctgaccctttttggggggttttacttttgttgtgcagAGCATATAGGAACAAAGACTGCTGTACAAATCAGGAGTCATGCTCAGAAATTCTTTACAAAG
- -ctctctc
- - - - - - - - - - - - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggggt