1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cgaacctaacacttgtttaattgtcttaggtttattgttatgcttttctttgtgtaactactgacctcatcaaaccatccatttttttcatggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAA
species | Glycine max |
transcript | GLYMA03G41760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGACAGAGGATGGATCTCAGAGCTTANAAAGGCAGGAGAAGCTNTG ATTNTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGEST: gi|298196953|gb|HO041696.1|HO041696
genomic: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGgtaaaatgaa ... tggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAG
EST: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTG ATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTEST: gi|192307067|gb|FK002705.1|FK002705
genomic: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGgtaaaatgaa ... tggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCT
EST: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTG ATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGEST: gi|298176670|gb|HO026791.1|HO026791
genomic: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGgtaaaatgaa ... tggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAG
EST: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTG ATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTG
genomic: ATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGgtaaaatgaa ... tggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTG
ttctttgtgtaactactgacctcatcaaaccatccatttttttcatggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAA
tactgac putative branch site (score: 1)
tccatttttttcat putative PPT
atttttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgaacctaacacttgtttaattgtcttaggtttattgttatgcttttctttgtgtaactactgacctcatcaaaccatccatttttttcatggcatttagATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - cctaaca
- - - - - - - - - - - - - - - - - - gttatgc
- - - - - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacct