1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccataaaatatctaattttttttcttcttttataatacattcttaaaaacacttttcaaaaaaatttaaacaaacaagtcctaaattactatttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTTGGGGACCATCTCAGGGTCTTCCTCCAAATGTTGGTGGAGGTCCTGGTT
species | Glycine max |
transcript | GLYMA03G40840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|193650907|gb|FK598522.1|FK598522
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCC-ACCAATCTEST: gi|208188329|gb|GD983125.1|GD983125
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|207732567|gb|GD704730.1|GD704730
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAACCTEST: gi|192331608|gb|FK019969.1|FK019969
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATG-A- AT--------CCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|193664017|gb|FK608709.1|FK608709
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAG-TTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|192328162|gb|FK020423.1|FK020423
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATG-A- AT--------CCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|193555319|gb|FK511018.1|FK511018
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCTAATACCCACCATGCEST: gi|15661574|gb|BI698945.1|BI698945
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGC
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|207822733|gb|GD793968.1|GD793968
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAACCTEST: gi|298183659|gb|HO028872.1|HO028872
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAGCAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTEST: gi|10848043|gb|BF070607.1|BF070607
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
EST: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAAT ATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
genomic: TAAGGAAGTTTTTAGTTGATCGCGGTGTAATTCCAATTTTTGAAATGAATgtaagtgtga ... atttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCT
aaaacacttttcaaaaaaatttaaacaaacaagtcctaaattactatttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTTGGGGACCATCTCAGGGTCTTCCTCCAAATGTTGGTGGAGGTCCTGGTT
tcctaaa putative branch site (score: 2)
ctatttcttc putative PPT
acttttcaaaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccataaaatatctaattttttttcttcttttataatacattcttaaaaacacttttcaaaaaaatttaaacaaacaagtcctaaattactatttcttcagATGCAAACAGCCAATCCCCACCATGCAGAGCACATGCCACCCCACCAATCTTGGGGACCATCTCAGGGTCTTCCTCCAAATGTTGGTGGAGGTCCTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
ccataaaa
- - - - - - - - - - - - - - - - - -tacattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtcc