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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaaaattacttttgttgttttggtactctatagccatgacttgtatattgcaggatggaatttaagattgataatttgacttatttatgtggcagGCCATATTCGGAATATTTATTTTCCATTTGACATAGGGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA

Basic information

species Glycine max
transcript GLYMA03G40550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40550.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 3'ss of exon 6
gttggaaaatta-cttttgttg--ttttggtactctatagccatgacttgtatattgcaggatggaatttaagattgataatttgacttatttatgtggcagGCCATATTCGGAATATTTATTTTCCATTTGACATAGGGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA
||   || || | ||  | |||  ||||  |  | | | |  ||   ||| || || |    |  |||  |||  ||  | | |  |||         |||| ||| ||||| || || ||||| ||||| ||||| | || ||| |||||||| || || ||||||||||||||||| ||||| || ||||| || || ||
gtcaaaagatcatctccttttgcctttttttttttttttgttattgtttg-attttccttcctcaaatg-aagcatggaactctctcttt--------gcagACCACATTCGTAACATCTATTTCCCATTCGACATTGAGATGGATACAGCATTGAGCGTTGCAACTGAAATGGTTGCTGAACTGGATATTACAGACCAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190162|gb|HO032283.1|HO032283
EST:     GAAAGATGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAG                         GCCATATTCGGAATATTTATTTTCCATTTGACATAGGGACGGACACAGCAT
genomic: GAAAGATGACGGTGGCATCTTTTTGAGACTAAGAATTGCAGACAAAGAAGgttggaaaat ... tatgtggcagGCCATATTCGGAATATTTATTTTCCATTTGACATAGGGACGGACACAGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatattgcaggatggaatttaagattgataatttgacttatttatgtggcagGCCATATTCGGAATATTTATTTTCCATTTGACATAGGGACGGACACAGCATTAAGTGTAGCAACTGAAATGGTTGCAGAACTCGACATTACTGATCAGGA
                                 atttgac  putative branch site (score: 4)
                                       cttattt  CT-rich tract
                  aatttaagattgataa  TA-rich tract