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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgattgctagctgtttttttattcctatcaatacttggttcttctaaataataccagtacttacataattatttacaccttctttttatgtgttagACATGGAATGCCTTGTCCTTTGGAACCTGCACTAGGACTCTCCGGCAACACTCTGACTATGTTACTTGCCTCGCAGCAGCAGAAAAAAAT

Basic information

species Glycine max
transcript GLYMA03G40440.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40440.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 4
gtttgttgattgctagctgtttttttattcctatcaatacttggttcttctaaataataccagtacttacataattatttacaccttctttttatgtgttagACATGGAATGCCTTGTCCTTTGGAACCTGCACTAGGACTCTCCGGCAACACTCTGACTATGTTACTTGCCTCGCAGCAGCAGAAAAAAAT
||||||  |||   | |  |  || |     | | ||    |||    ||| | || |        |||   | |||||| |  ||| ||   ||     |||| ||||||  ||||||   |||||| || || ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
gtttgtcaatttgaatccatcattgttggttttttaacctatggaaaatctgattatt-------tttattgacttatttcc--cttattgagatacaccagACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712994|gb|BW684288.1|BW684288
EST:     TTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAG                         ACATGGAATGCCTTGTCCTTTGGAACCTGCACTAGGACTCTCCGGCAACAC
genomic: TTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgat ... tatgtgttagACATGGAATGCCTTGTCCTTTGGAACCTGCACTAGGACTCTCCGGCAACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaaataataccagtacttacataattatttacaccttctttttatgtgttagACATGGAATGCCTTGTCCTTTGGAACCTGCACTAGGACTCTCCGGCAACACTCTGACTATGTTACTTGCCTCGCAGCAGCAGAAAAAAAT
                tacttac  putative branch site (score: 1)
                              tttacaccttcttttt  putative PPT
                tacttacataattatt  TA-rich tract