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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgattgctagctgttttttgttccaatcaatccttgctcttcatcaataatacagtacttacacagttatttacacctttttaaatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT

Basic information

species Glycine max
transcript GLYMA03G40360.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40360.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 4
gtttgttgattgctagctgttttttgttccaatcaatccttgctcttcatcaataatacagtacttacacagttatttacacctttttaaatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT
||||||  |||   | |  |  || |||    |   |  |  |   |    |||   |   |  |||   | |||||| | | | || | ||     |||| ||||||  ||||||   |||||| ||||| ||||| ||||| ||||||||||||||||||||||| || || ||||||| |||||||
gtttgtcaatttgaatccatcatt-gtt--ggtt--ttttaacctatggaaaatctgattatttttattgacttattt-cccttattgagatacaccagACCTGGAATTGCTTGTCTGATGGAACTTGTACCAGGACTCTCCGTCAACACTCTGACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617649|gb|DB967207.1|DB967207
EST:     TTGTAGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAG                         ACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACAC
genomic: TTGTAGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgat ... aatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatcaataatacagtacttacacagttatttacacctttttaaatttgttagACATGGAATGCCTTGTCCTTTGGAACCTGTACTAGGACACTCCGACAACACTCTGACTATGTTACTTGCCTTGCAGCAGCAGGAAAAAAT
                 tacttac  putative branch site (score: 1)
                            ttatttacaccttttt  TA-rich tract