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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagattcttatataactgagaagaaaacatccattatgagttgtttttctttggcatctttttctaaagccttgtttactttttgttcacagGCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAG

Basic information

species Glycine max
transcript GLYMA03G40260.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6846821|gb|AW349111.1|AW349111
EST:     GCGACACTTGCTTGTGGCCTTGCTGGAACTGGTGCTGCGTTTGCTTTCTG                         GCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGAACTGGTGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTT
EST: gi|31471794|gb|CD413822.1|CD413822
EST:     GCGACACTTGCTTGTGGCCTTGCTGGAACTGGTGCTGCGTTTGCTTTCTG                         GCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTT
genomic: GCGACACTTGCTTGTGGCCTTGCTGGAACTGGTGCTGCGTTTGCTTTCTGgttagattct ... ttgttcacagGCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttgtttttctttggcatctttttctaaagccttgtttactttttgttcacagGCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAG
                        ttctaaa  putative branch site (score: 2)
                                ccttgtttacttttt  CT-rich tract
                     tttttctaaa  TA-rich tract