Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttatctgccttgttttactttatgtaatcaatatatttatctttgcttatttatagccttgactttgtttgatttttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTAC

Basic information

species Glycine max
transcript GLYMA03G39210.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39210.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
gtttgttatctgccttgttttactttatgtaatcaatatatttatctttgcttatttatagccttgactttg--tttg-atttttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTAC
          |   ||| |||| | ||     |  ||    || |   ||  |    ||    ||  | |    |||| | || | |||||||| || ||||| |||||| | |||||||| |||||||| || || ||||| || |||||  | ||||||||||| ||||| || || ||||| ||||| |
---------gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC

upper sequence: GLYMA03G39210.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 3'ss of exon 3
gtttgttatc-tgccttgttttactttatgtaatcaatatatttatctttgcttatttatagccttgactttgtttgatttttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTAC
|| ||||||  | || |   | |     | |||   ||  || |   | || |  |||    |  |    || |||||    |  |||||||||| ||||| |||||| | ||||| || |||||||| |||||||| |||||||||||| ||||||||||||| ||||||||  | ||||| || || |
gtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtagTTTGAAGCAGCATGGGCTCTCACAAACATTGCTTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252252|gb|BG363155.1|BG363155
EST:     TTCCACGCTTTGTTGATTTCTTGATGAGGGAAGATTTTCCACAGCTGCAG                         TTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAAC
genomic: TTCCACGCTTTGTTGATTTCTTGATGAGGGAAGATTTTCCACAGCTGCAGgtttgttatc ... tttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatatttatctttgcttatttatagccttgactttgtttgatttttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTAC
                                           tttttgtt  CT-rich tract
     atttatctttgcttat  TA-rich tract