1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gaacttctctagcatttttagtgtttctcacttcttctaacatttctttgcataatattaagttgatttggcatggacatcaaatatcttgttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGT
species | Glycine max |
transcript | GLYMA03G39130.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|192297309|gb|FG992403.1|FG992403
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|193704960|gb|FK643960.1|FK643960
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|207682534|gb|GD664863.1|GD664863
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|298196930|gb|HO041673.1|HO041673
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|18041310|gb|BM309604.1|BM309604
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|208331009|gb|GE128558.1|GE128558
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGCCCTTGCGGCGTTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCEST: gi|4436994|gb|AI522859.1|AI522859
genomic: AGCCCTTGCGGCG-TTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
ctttgcataatattaagttgatttggcatggacatcaaatatcttgttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGT
tgttaat putative branch site (score: 3)
tcttgtt CT-rich tract
ataatattaagttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacttctctagcatttttagtgtttctcacttcttctaacatttctttgcataatattaagttgatttggcatggacatcaaatatcttgttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - cttcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgga