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gtatgaattcttatccactgaatgatgtattagtttagcctttcaaacagagcgacatatgatgctgacatttttgtataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
species | Glycine max |
transcript | GLYMA03G38850.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA GCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAEST: gi|192296806|gb|FG993104.1|FG993104
genomic: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAAgtatgaattc ... ataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAA
EST: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA GCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAEST: gi|298174237|gb|HO017573.1|HO017573
genomic: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAAgtatgaattc ... ataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAA
EST: ATACGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA GCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAEST: gi|151410500|gb|EV280315.1|EV280315
genomic: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAAgtatgaattc ... ataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAA
EST: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAA GCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAA
genomic: ATATGGCAGAGAGGATTGTTGGGCATGGATCATTTGGGGTTGTCTTCCAAgtatgaattc ... ataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAA
gtttagcctttcaaacagagcgacatatgatgctgacatttttgtataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
tgctgac putative branch site (score: 2)
acatttttgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaattcttatccactgaatgatgtattagtttagcctttcaaacagagcgacatatgatgctgacatttttgtataatcgcagGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAAGTTCTTCAAGACAAGAGGTATAAAAACCGGGAGCTGCAAACAATGCGCCTTCTTGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC