1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgctgtgttattagtattaccacaattaatatatctggctttcctcaatttatactaattatcctgtgtgttatgcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATATTTATTCCACTGCCAGATGATCTTCTCGTTAACTTGTCTGAATCAAGAA
species | Glycine max |
transcript | GLYMA03G38830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAG TCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATAEST: gi|5342416|gb|AI794700.1|AI794700
genomic: AAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgctgtg ... gcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATA
EST: GCAACTTTTGACAGCACAATACATTTTTATAACATGAAG TCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATAEST: gi|10845316|gb|BF068463.1|BF068463
genomic: GCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgctgtg ... gcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATA
EST: AAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAG TCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATAEST: gi|6482999|gb|AW202136.1|AW202136
genomic: AAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgctgtg ... gcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATA
EST: AAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAG TCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATA
genomic: AAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgctgtg ... gcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATA
tatatctggctttcctcaatttatactaattatcctgtgtgttatgcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATATTTATTCCACTGCCAGATGATCTTCTCGTTAACTTGTCTGAATCAAGAA
tactaat putative branch site (score: 1)
tgctttt putative PPT
tcaatttatactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctgtgttattagtattaccacaattaatatatctggctttcctcaatttatactaattatcctgtgtgttatgcttttgcagTCTTCCTTGACTCAACCACAGATGTTGGTAGTGTCAGATCTCGATGATATATTTATTCCACTGCCAGATGATCTTCTCGTTAACTTGTCTGAATCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG