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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggataatgcatttctacattcaatactatttacttctattggcttcttttttcctcgcttgtgcatctagcaaatgcttattctacctctaatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAAG

Basic information

species Glycine max
transcript GLYMA03G38810.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588547|gb|AW704270.1|AW704270
EST:     CATTGACTCCGGAGGCATGTGCGCCATAGATTGCTATACTTACTATGGAG                         ATTCNGCGGACAATTGGCGAT
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGAT
EST: gi|213596238|gb|DB960170.1|DB960170
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|151402134|gb|EV271947.1|EV271947
EST:     ATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: ATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|151395479|gb|EV265356.1|EV265356
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGATAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|10846293|gb|BF069216.1|BF069216
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGAC
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGAC
EST: gi|37997687|gb|CF809276.1|CF809276
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|151407958|gb|EV277773.1|EV277773
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|15202616|gb|BI425495.1|BI425495
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttttcctcgcttgtgcatctagcaaatgcttattctacctctaatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAAG
                                          ctctaat  putative branch site (score: 3)
                                cttattctacctct  CT-rich tract
                                 ttattcta  TA-rich tract