1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtcctagtattactccattctcccactcatatgccatgcatctcttgcaggcaactcttgtgacacaatgattcatagtttcaaaatatatttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGGAATTATTGTTCAAGGGAATGCAGAAGGCCAACCAG
species | Glycine max |
transcript | GLYMA03G38430.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG GTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGEST: gi|5666588|gb|AI930624.1|AI930624
genomic: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAGgttagtgaga ... tttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAG
EST: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG GTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTCCAATGCAGEST: gi|8283845|gb|BE021404.1|BE021404
genomic: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAGgttagtgaga ... tttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAG
EST: AAGTACGGTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAACGAG GTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGEST: gi|213602988|gb|DB958576.1|DB958576
genomic: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAGgttagtgaga ... tttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAG
EST: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAG GTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAG
genomic: AAGTACGGTACTGTGATGGAGCATCTTTCAGTGGAGATAGTCAAAACGAGgttagtgaga ... tttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAG
tgcaggcaactcttgtgacacaatgattcatagtttcaaaatatatttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGGAATTATTGTTCAAGGGAATGCAGAAGGCCAACCAG
tttgtttc CT-rich tract
aatgattcatagtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctagtattactccattctcccactcatatgccatgcatctcttgcaggcaactcttgtgacacaatgattcatagtttcaaaatatatttgtttcagGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGGAATTATTGTTCAAGGGAATGCAGAAGGCCAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - ctccatt
- - - - - - - - - -ctcccac
- - - - - - - - - - - - - - - - -ccatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaca