1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggatccttttagtgaatagaattgagtatttttgttgactaatgtctgagctgcacatacatttattctactaatcttgctcttttgctattatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
species | Glycine max |
transcript | GLYMA03G37170.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAA GTTATTGATAAAGTCCAAGAAGAAACCAAGAGCCGTGCATEST: gi|208176841|gb|GD977690.1|GD977690
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|4306331|gb|AI443889.1|AI443889
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAAGAGC-GTGCAGEST: gi|192311359|gb|FK003802.1|FK003802
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAA-GAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|192311360|gb|FK003803.1|FK003803
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
ctgagctgcacatacatttattctactaatcttgctcttttgctattatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
tactaat putative branch site (score: 1)
ttattttt putative PPT
ttttgctattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatccttttagtgaatagaattgagtatttttgttgactaatgtctgagctgcacatacatttattctactaatcttgctcttttgctattatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA