1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggatccttttagtgaatagaattgagtatttttgttgactaatgtctgagctgcacatacatttattctactaatcttgctcttttgctattatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
species | Glycine max |
transcript | GLYMA03G37170.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|22541271|gb|BU091114.1|BU091114
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAA GTTATTGATAAAGTCCAAGAAGAAACCAAGAGCCGTGCATEST: gi|4306331|gb|AI443889.1|AI443889
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAAGAGC-GTGCAGEST: gi|298177576|gb|HO027243.1|HO027243
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAA-GAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|15285536|gb|BI469427.1|BI469427
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|20449577|gb|BQ253701.1|BQ253701
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298188838|gb|HO035531.1|HO035531
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298167205|gb|HO010644.1|HO010644
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|15287452|gb|BI471343.1|BI471343
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|20449634|gb|BQ253758.1|BQ253758
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|6227965|gb|AW156627.1|AW156627
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298165378|gb|HO011427.1|HO011427
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|12773301|gb|BG238228.1|BG238228
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298181583|gb|HO025758.1|HO025758
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298169719|gb|HO021079.1|HO021079
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298190031|gb|HO032152.1|HO032152
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298180399|gb|HO025600.1|HO025600
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|298195412|gb|HO039243.1|HO039243
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|6724523|gb|AW308922.1|AW308922
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|208176841|gb|GD977690.1|GD977690
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGEST: gi|24206235|gb|BU965488.1|BU965488
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
ctgagctgcacatacatttattctactaatcttgctcttttgctattatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
tactaat putative branch site (score: 1)
ttattttt putative PPT
ttttgctattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatccttttagtgaatagaattgagtatttttgttgactaatgtctgagctgcacatacatttattctactaatcttgctcttttgctattatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - -gaatagaa
- - - - - - - - - - - - - - - - tgttgac
- - - - - - - - - - - - - - - - - - - - -atgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -cacatac