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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcataatttccctttcatttagttccatttgaattgatcattgaatttgctcttttgagtttgggttatgatgttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCTATGGATGAAGGGTTATAAGGTCATTGTTCTTGACGTGCCTTTGTTATTT

Basic information

species Glycine max
transcript GLYMA03G37050.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37050.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g00040.t01 (Vitis vinifera), 3'ss of exon 2
------------gtattcataatttccctttcatttagttccatttgaattgatcattgaatt---tgctcttttgagtttgggttatgatgttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCTATGGATGAAGGGTTATAAGGTCATTGTTCTTGACGTGCCTTTGTTATTT
            || |   |   ||    ||||||    |  | ||| | |||  ||  ||||   ||   ||||    |||  ||   ||    ||||||  | ||||| ||||  ||||||  ||| || ||||||||  |||| || |||||||||||||| |  ||||| ||||||||||| || |||||||| |||
aatcttttttgagtgtcagttgattataattcatt-gccttaacttgtaatgaagatgcaattatatgagtttttactcttgtttttatatacatttttagGCTACTGGCCCCTTTTATATCATCTGGTATTTTTTGGGAAGTTTTCAAACTATGGATGAAGGGGTTCAAGGTTATTGTTCTTGATGTCCCTTTGTTGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120494333|gb|EH222500.1|EH222500
EST:     CGTCAAGTTCTCAACCG                         ATTGCTGGCTCCTTACATATCACGTGGAATATTATGGGACAGTTTGAAGCT
genomic: CGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT
EST: gi|58021974|gb|CX708715.1|CX708715
EST:     CTTGGCCAAATTGTTTTCTCGGATCCGGATAAGCGTCAATTTCTCAACCG                         ATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT
genomic: CTTGGCCAAATTGTTTTCTCGGATCCGGATAAGCGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT
EST: gi|151401494|gb|EV271308.1|EV271308
EST:     CTTGGCCAAATTGTTTTCTCGGATCCGGATAAGCGTCAATTTCTCAACCG                         ATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT
genomic: CTTGGCCAAATTGTTTTCTCGGATCCGGATAAGCGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT
EST: gi|151408301|gb|EV278109.1|EV278109
EST:     CTTGGCCAAATTGTTTTCTCGGATCCGGATAAGCGTCAATTTCTCAACCG                         ATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT
genomic: CTTGGCCAAATTGTTTTCTCGGATCCGGATAAGCGTCAATTTCTCAACCGgtattcataa ... gttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaattgatcattgaatttgctcttttgagtttgggttatgatgttgttttagATTGCTGGCTCCTTACATATCACGTGGAATATTTTGGGACATTTTGAAGCTATGGATGAAGGGTTATAAGGTCATTGTTCTTGACGTGCCTTTGTTATTT
    aattgat  putative branch site (score: 4)
                                              ttgtttt  putative PPT
            attgaattt  TA-rich tract