Sequence
atgc intronic sequence ATGC exonic sequence...tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
Basic information
species | Glycine max |
transcript | GLYMA03G36430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G54720.1 (Arabidopsis thaliana), 3'ss of exon 4
tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttt-tattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
|| | | || ||| | | | | |||| | | | || | | | | | ||||| || | |||||||||||||||| ||| |||| ||||||||||| | ||| | || || || ||| | || || || || ||||| |||||| ||
------------------gtgagtagactattcaaaa--gagctcatacattgtc------tttgtaatgtaaaactatgtaatgttttaatgaactgcagATTCAGAGGCTAAGTAGAGTAGATTCTGATTTTTCCGGTTTTCTTCATCATGCCGGGATACCGTCTATAGACATGTACTATGGAGCAG
upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0352g00020.t01 (Vitis vinifera), 3'ss of exon 4
-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
| |||| | || ||| | ||| | | || ||| | | | | ||| | | | ||| || || |||||||||||||| ||||| |||||||| |||| |||||| |||||| || ||||||| ||||||||||| || ||||| | || ||||||||||
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatat-ggattgtatgaagtaattattgggattgtcttggcgggattgcagATTCAAAGGCTAAGTGGAGTGGATTATGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0285g00060.t01 (Vitis vinifera), 3'ss of exon 4
-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
| |||| | || ||| | ||| | | || |||| | | | | ||| | | | ||| || || ||||||||||||||||||||| |||||||| ||||||||||| |||||| || ||||||| ||||||||||| || ||||| | || ||||||||||
gctttataaattatggctttggatatgtcaaaatttatctttgttttttctatat-ggattgtatgaagtaattattgggattgtcttggctggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0319g00060.t01 (Vitis vinifera), 3'ss of exon 3
-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
| |||| || || ||| | ||| | | | ||| | | | | ||| | | | ||| || || | ||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||||| || ||||| | || ||||||||||
gctttataaattttggctttggatatgtcaaaatttatatttgttgtttctatat-ggattgtatgaagtaattattgggattgtcttggctagattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTTCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0327g00020.t01 (Vitis vinifera), 3'ss of exon 3
-tatgataatgttgggtttttgccatgctttt-ttcaaactgg--gtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
| |||| | || ||| | ||| || | | | | ||||| || | | | ||| | ||| | | | | | || |||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||| ||||||||||| || ||||| | || ||||||||||
gctttataaattatggctttggatatgtcaaaatttatatttgttgtttctatatggattgtatgaagtaattattggg--attgtcatg--gttggattgcagATTCAGAGGCTAAGTGGAGTGGATTCTGATTTTTCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAG
upper sequence: GLYMA03G36430.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0032g00670.t01 (Vitis vinifera), 3'ss of exon 4
-tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
| |||| | || ||| | ||| | | || ||| | | | | ||| | | | ||| || || |||||||||||| |||||||| |||||||| ||||||||||| |||||| || ||||||| ||||||||||| || ||||| | || ||||||||||
gctttataaattatggctttggatatgtcaaaatttatctttgttgtttctatat-ggactgtatgaagtaattattgggattgtcttggctggattgcagATCCAGAGGCTAAGTGGAGTGGATTCTGATTTTGCTCCACTTTTGCAACATGCAGGGGTTCCTTCTGTTGATTTATACTATGGAAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326988|gb|FK015185.1|FK015185EST: GGTGTGTCATTGTATGAGAATTGGGCTGCTGGTGGTGGAGGCAATAAT ATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACAC
genomic: GGTGTGTCATTGTATGAGAATTGGGCTGCTGGTGGTGGAGGCAATAATgtaatgcttt ... tggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
ttttatt CT-rich tract
ttttattttattggat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgataatgttgggtttttgccatgcttttttcaaactgggtttcaattttgttgtgatgtcttcattgcttagccacttttattttattggattgcagATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - tgttggg
- - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttag