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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaattatgcaagcattgttactcagaaacgtacatttaaaagaaacaatacatttgacttttttcccttttttgttggcagTTCTGCATTCATGTCCCTGGCTGCTCGATTTCCTCTAAGGTCAAGTAGTAACTACAAAACATGCCCCGAGGAAAGCACAAGTTTGGTAATCAATGAGCCA

Basic information

species Glycine max
transcript GLYMA03G34860.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18726813|gb|BM523770.1|BM523770
EST:     TCTGTTATTGGAGTTTTCCTCACTCAAAATGTCTCGGACCATCTTTCCAG                         TTCTGCATTCATGTCCCTGGCTGCTCGATTTCCTCTAAGGTCAAGTAGTAA
genomic: TCTGTTATTGGAGTTTTCCTCACTCAAAATGTCTCGGACCATCTTTCCAGgtagaaatta ... ttgttggcagTTCTGCATTCATGTCCCTGGCTGCTCGATTTCCTCTAAGGTCAAGTAGTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacgtacatttaaaagaaacaatacatttgacttttttcccttttttgttggcagTTCTGCATTCATGTCCCTGGCTGCTCGATTTCCTCTAAGGTCAAGTAGTAACTACAAAACATGCCCCGAGGAAAGCACAAGTTTGGTAATCAATGAGCCA
                         atttgac  putative branch site (score: 4)
                          tttgacttttttccct  CT-rich tract
       atttaaaagaaacaat  TA-rich tract