1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttacaccaaatatgttactattattttgtggtggtcatcaactatgctacaatgtaacaagctattcagtcatttagttattaaaatctgattcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATGTTATTGGAGAAAATGATGAG
species | Glycine max |
transcript | GLYMA03G34300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|151395984|gb|EV265861.1|EV265861
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|209724178|gb|BW659712.1|BW659712
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|20813031|gb|BQ297509.1|BQ297509
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGEST: gi|4314103|gb|AI461222.1|AI461222
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTG
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|20449041|gb|BQ253165.1|BQ253165
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|15204096|gb|BI426864.1|BI426864
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|10233567|gb|BE802455.1|BE802455
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|20449080|gb|BQ253204.1|BQ253204
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|9204176|gb|BE330400.1|BE330400
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTT-ACTGGAGAAATCAG CGCGGAACAACTAACAGATCTTGGATGCAAGTGGGTTGGTCTGGG-CATTCEST: gi|120530487|gb|EH258620.1|EH258620
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|9563997|gb|BE473506.1|BE473506
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTACAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|209715618|gb|BW657385.1|BW657385
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCEST: gi|17964485|gb|BM271219.1|BM271219
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
EST: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAG CGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
genomic: GCCCAGAATTCTTGGGTTGGAAAAGGTGGTGCTTTTACTGGAGAAATCAGgttagcttgt ... attcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTC
gctacaatgtaacaagctattcagtcatttagttattaaaatctgattcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATGTTATTGGAGAAAATGATGAG
ttcttgt CT-rich tract
atttagttattaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaccaaatatgttactattattttgtggtggtcatcaactatgctacaatgtaacaagctattcagtcatttagttattaaaatctgattcttgtagCGCGGAACAACTAAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATGTTATTGGAGAAAATGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -caccaaa
- - - - - - - - - - - - - - tggtggt
- - - - - - - - - - - - - - - - - -catcaac
- - - - - - - - - - - - - - - - - - - - - - tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcta