1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tattttaaaattttgaatgataatacttgtaatattgttgaatgcattggactgtaatctttacatgcattttttcaccatgcttctttttatgttgtagGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAG
species | Glycine max |
transcript | GLYMA03G34050.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATG GCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAEST: gi|6951687|gb|AW423755.1|AW423755
genomic: GTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATGgtatgtgctg ... tatgttgtagGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGA
EST: GTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGAGTTATG GCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGA
genomic: GTGAGCACTACCAATGGAACATGGATATTATTGGTGTTCCCGGGGTTATGgtatgtgctg ... tatgttgtagGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGA
attggactgtaatctttacatgcattttttcaccatgcttctttttatgttgtagGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAG
ttttttcaccatgctt CT-rich tract
ttctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttaaaattttgaatgataatacttgtaatattgttgaatgcattggactgtaatctttacatgcattttttcaccatgcttctttttatgttgtagGCTGAAGCAGAGCTTATAGCTTCTATCGTCACTTTGTTTAAGCGAATAGGAATTACAGAATCAGATGTCGGATTTAAGGTTTCCAGTCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - -tgaatga
- - - - - - - - - - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - -gactgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgca