Sequence
atgc intronic sequence ATGC exonic sequence...gaattgcttagcttacattctagaactttaatgtattggaatggtatgtcaatggcactgattggaacctatcttaattgatgtattttgaattcaacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
Basic information
species | Glycine max |
transcript | GLYMA03G33740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 3'ss of exon 4
------gaattgcttagcttacattctagaactttaatgtattggaatggtatgtcaatggcactgattggaacctatcttaattgatgtattttgaatt-caacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
|| ||| ||| | | ||| | ||| ||| | ||| | | || | | | | || | | || | ||| || ||||||||||| ||| ||||| | |||||||||||||||||||| | ||||| ||| |||| | ||||| ||||||||||| || || |||
agttcgtttttaagtaggttaagt--tgaaacatgaatcaattttggcgtcatgactcttgccttctctaa-----gtttaaaataaagtttgttgctttgtaacagTCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAG
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 3'ss of exon 4
gaattgcttagcttacattctagaactttaatgtattggaatggtatgtca-atggcactgattggaacctatcttaat-tgatgtattttgaattcaacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
|| || | | | | || | || || | | ||| | || | | ||| | | || | ||| || ||||| || |||||| |||| || |||||||||||||||||||| || ||||||| | |||| | ||||| ||| |||| ||||| ||||||
--ataactgaaatctggctgagattccttttccgagaacaaaattactttatatgttttttatccacttcaagaataagattaagtttgttgcttttaacagCCGCTGTACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGGAAATCTGTACGTATATGAAAAG
upper sequence: GLYMA03G33740.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 4
---gaattgcttagcttacattctagaactttaatgtattggaatggtatgtcaatggc-actgattggaacctatcttaattga-tgtattttgaattcaacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
|||| | | || | | || ||| | | | | | | ||| | | | | | || | | | | | | ||| || || || ||||||||| | ||||||||||| |||| ||||||||| |||| |||||| |||| ||||||| |||||||| || || || |||
tctgaataaggactttcagatgcattcagttccatgca----agtagaagtttaatatttagttagtagg-tttaaccaagtaaactacttcttgtttttaatagCCGTTGTACTAGCATTGCATGGGTCCCTGATGGTGATGGTGCTTTCGTTGTTGCTCATGCTGATGGAAATTTGTACGTGTATGAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtcaatggcactgattggaacctatcttaattgatgtattttgaattcaacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
ttaattgatgtatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaattgcttagcttacattctagaactttaatgtattggaatggtatgtcaatggcactgattggaacctatcttaattgatgtattttgaattcaacagTCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAG
- - tgcttag
- - - - - - -tacattc
- - - - - - - - - - - - - - - - - - - - - ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgta