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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttaatatatatgcctcacttcttttatttcggttcattagtccttttatttttgtttagttataaccaactcagttgattgcatcagcaccatatattacttatattagacaggcctctattgcagGTAGGACTAGCACTTCAGAGAATGGTTCATTTATTTATCCTGCTGAAAATATGTCCATAGATAACATGTCTTTCCCTTCTCATTGGAATTCTTCCACAAG

Basic information

species Glycine max
transcript GLYMA03G33670.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591153|gb|AW706892.1|AW706892
EST:     TGACCAGAACTGGAATCATATGCATACTGATCAACAATGTGTGCACCTTG                         GTAGGACTAGCACTTCATAGAATGGTTCATTTATTTATCCTGCTGAAAATA
genomic: TGACCAGAACTGGAATCATATGCATACTGATCAACAATGTGTGCACCTTGgtaatgttaa ... tctattgcagGTAGGACTAGCACTTCAGAGAATGGTTCATTTATTTATCCTGCTGAAAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttgattgcatcagcaccatatattacttatattagacaggcctctattgcagGTAGGACTAGCACTTCAGAGAATGGTTCATTTATTTATCCTGCTGAAAATATGTCCATAGATAACATGTCTTTCCCTTCTCATTGGAATTCTTCCACAAG
 agttgat  putative branch site (score: 5)
                                           cctctatt  putative PPT
                    atatattacttatatt  TA-rich tract