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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttgcagataaccttatgcttgttctaattttagtaatttatccatcttatatcagcactttgacaggaccttgttatctcttctagAAATCTATGCAGACCCCACTCACTTGTCATACGAGGCCTTAAATTTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAT

Basic information

species Glycine max
transcript GLYMA03G33400.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33400.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0040g03130.t01 (Vitis vinifera), 3'ss of exon 5
-----gtactttgcaga-taaccttatgcttgttctaattttagtaattta----tccatcttatatcagcactttgacaggaccttgttatctcttctagAAATCTATGCAGACCCCACTCACTTGTCATACGAGGCCTTAAATTTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAT
      ||| ||      |   || |    | |  |   |  | || |||     | |  ||| |  | ||    | | || | || ||| |   ||  |||| | || ||||| || |  |||| |||||| || |   |    ||||||||||||||||||| ||||||||| ||| | 
atttcttaccttttgatctcttctgaaatgtatagtttctacaatagttttgtgtttctccttgttgctgctaggtaatagaatct-gttgttggtttcagAAGTGTACGCAGATCCTAGCCACTCGTCATATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaatttatccatcttatatcagcactttgacaggaccttgttatctcttctagAAATCTATGCAGACCCCACTCACTTGTCATACGAGGCCTTAAATTTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAT
                          ctttgac  putative branch site (score: 4)
                                     ccttgttatctcttct  putative PPT
            atcttatat  TA-rich tract