1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggccataatctaatttccaaacttctacctcgtgttgatttgctcttaacatggttattgctctctaatgggttttatgagctttaaatcattgatgtcaatttgaattgttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG
species | Glycine max |
transcript | GLYMA03G33270.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193696875|gb|FK638017.1|FK638017
genomic: AACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208156572|gb|GD956854.1|GD956854
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|298199246|gb|HO042609.1|HO042609
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193684971|gb|FK626495.1|FK626495
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193455254|gb|FK419693.1|FK419693
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|254344581|gb|GR855452.1|GR855452
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208318139|gb|GE114078.1|GE114078
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: AAAGAGGTCATATAGAAAAGAACTGTAAGAACTAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|207839844|gb|GD810037.1|GD810037
genomic: AAAGAGGTCATATAGAAAAGAACTGTAAGAAC-AGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: -AAGAGGTCAGTATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|19347351|gb|BM892231.1|BM892231
genomic: AAAGAGGTCA-TATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAAACG-GGACGGAGTCTTTTC-CGTTCAACAGTAAGGTCACGTTCTCCTEST: gi|207765392|gb|GD738171.1|GD738171
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAA-CGTGGACGGAGTCTTT-CACGTTCACCAGTAAGGTCACGTTCTCCT
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208022923|gb|GD820933.1|GD820933
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: AAAGAGGTCATATAAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|254344582|gb|GR855453.1|GR855453
genomic: AAAGAGGTCATAT-AGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208276808|gb|GE073395.1|GE073395
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|7692938|gb|AW761037.1|AW761037
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193626318|gb|FK572682.1|FK572682
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|208233570|gb|GE031451.1|GE031451
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGEST: gi|193320057|gb|FK284318.1|FK284318
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
EST: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAG CCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCTTCG
genomic: GAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggccata ... gttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCG
ctaatgggttttatgagctttaaatcattgatgtcaatttgaattgttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG
ttgttct CT-rich tract
tttaaatcattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggccataatctaatttccaaacttctacctcgtgttgatttgctcttaacatggttattgctctctaatgggttttatgagctttaaatcattgatgtcaatttgaattgttctaacagCCAACGTGGACGGAGTCTTTCACGTTCACCAGTAAGGTCACGTTCTCCTCGTCGTGGAAGAAGCAGGGATCGAAGCTACAGCCGAGACCACAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC