1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgttgttatgtggcaaatatttgcaatttacttattaatatgtgatattgtttaaagacatcgacccatgttgcttttaaggtgccttaattggtttaacgtcaggaagggattttgtttttgtttcttatctggtattggttctctttcttcagcttgatagacaataatgctatctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACTAAATTACATGCAAATAAGGATAATGCTGTTGTTAAATCAGAACTAGTTG
species | Glycine max |
transcript | GLYMA03G33080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAAT GTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACTEST: gi|208296980|gb|GE096576.1|GE096576
genomic: TTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATgtacgttgtt ... tctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACT
EST: TGGTCTGATTATTTCCTGAAGTCTTGGAGGATGGAAAT GTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACTEST: gi|193479421|gb|FK444206.1|FK444206
genomic: TGGTCTGATTA-TTCCTGAAGTCTTGGAGGATGGAAATgtacgttgtt ... tctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACT
EST: TTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAAT GTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCEST: gi|192298876|gb|FG987621.1|FG987621
genomic: TTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATgtacgttgtt ... tctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCC
EST: TTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAAT GTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACT
genomic: TTCATACTGGTGCTGGTCTGATTATTCCTGAAGTCTTGGAGGATGGAAATgtacgttgtt ... tctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACT
tctggtattggttctctttcttcagcttgatagacaataatgctatctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACTAAATTACATGCAAATAAGGATAATGCTGTTGTTAAATCAGAACTAGTTG
gcttgat putative branch site (score: 5)
tctgtttc putative PPT
acaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttgttatgtggcaaatatttgcaatttacttattaatatgtgatattgtttaaagacatcgacccatgttgcttttaaggtgccttaattggtttaacgtcaggaagggattttgtttttgtttcttatctggtattggttctctttcttcagcttgatagacaataatgctatctgtttcagGTCAGAGTTGATATGGGGGAACCAATTCTTAAAGCCTCAGATGTGCCTACTAAATTACATGCAAATAAGGATAATGCTGTTGTTAAATCAGAACTAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT