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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcagaaataggtaaaaaacggtgacttgttagtgcttcaattggtttgccaaggtaaccaattctgttttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT

Basic information

species Glycine max
transcript GLYMA03G33000.6
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207840938|gb|GD810193.1|GD810193
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|193320747|gb|FK283132.1|FK283132
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATCGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|151404690|gb|EV274504.1|EV274504
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|298199436|gb|HO042799.1|HO042799
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|7925031|gb|AW831057.1|AW831057
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|8827754|gb|BE211484.1|BE211484
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|27446381|gb|CA953504.1|CA953504
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|192324459|gb|FK015810.1|FK015810
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|5510301|gb|AI856743.1|AI856743
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|10236851|gb|BE805739.1|BE805739
EST:     GCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: GCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|208275603|gb|GE078223.1|GE078223
EST:     TGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: TGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|16105384|gb|BI893124.1|BI893124
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|192296495|gb|FG989111.1|FG989111
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|207702226|gb|GD682981.1|GD682981
EST:     TTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: TTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|9986811|gb|BE660919.1|BE660919
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
EST: gi|17022987|gb|BM094021.1|BM094021
EST:     CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAG                         GGCCTGGTGCTCCAACGATCTTCAATTGT
genomic: CATGACCAGAAGATCTGTTGCTGCACACCCGTGGCACGACCTTGAGATAGgtaagcattc ... tttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttgttagtgcttcaattggtttgccaaggtaaccaattctgttttaatgcagGGCCTGGTGCTCCAACGATCTTCAATTGT
                                            ttttaat  putative branch site (score: 3)
                                       ttctgtttt  CT-rich tract
                                     aattctgttttaat  TA-rich tract